From a1f9407df1b2b6d482a1613f79ac4f7bddece1c1 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Fri, 1 Aug 2025 16:11:03 +0100 Subject: [PATCH 1/4] Update cython from 0.29.23 to 3.1.2 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 6380aca..b1eb9c2 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,4 +1,4 @@ -Cython==0.29.23 +Cython==3.1.2 numpy==1.21.0 pysam==0.16.0.1 nose==1.3.7 From 4f40196128dbea55670b8d642d0d147208cf3e84 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Fri, 1 Aug 2025 16:11:04 +0100 Subject: [PATCH 2/4] Update numpy from 1.21.0 to 2.3.2 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index b1eb9c2..9139567 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,5 +1,5 @@ Cython==3.1.2 -numpy==1.21.0 +numpy==2.3.2 pysam==0.16.0.1 nose==1.3.7 tables==3.6.1 From 2394f00726c07f797e2895d9131d9eca04d72672 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Fri, 1 Aug 2025 16:11:04 +0100 Subject: [PATCH 3/4] Update pysam from 0.16.0.1 to 0.23.3 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 9139567..f919260 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,5 +1,5 @@ Cython==3.1.2 numpy==2.3.2 -pysam==0.16.0.1 +pysam==0.23.3 nose==1.3.7 tables==3.6.1 From d6372942860e26e811bdac679cada26cf21822b2 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Fri, 1 Aug 2025 16:11:05 +0100 Subject: [PATCH 4/4] Update tables from 3.6.1 to 3.10.2 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index f919260..5e5e320 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -2,4 +2,4 @@ Cython==3.1.2 numpy==2.3.2 pysam==0.23.3 nose==1.3.7 -tables==3.6.1 +tables==3.10.2