Feature Description
Add a configuration option use_cwl_instruction_as_fallback : bool that triggers, if there is no code for a tool in Shell script or Snakemake output. If the option is set, search for a CWL instruction and if it exists, generate a call to CWL tool to execute the CWL definition.
This enables testing switches from full CWL to Snakemake, for example, while preserving the possibility to execute the generated workflow.
Feature Description
Add a configuration option
use_cwl_instruction_as_fallback : boolthat triggers, if there is nocodefor a tool in Shell script or Snakemake output. If the option is set, search for a CWL instruction and if it exists, generate a call to CWL tool to execute the CWL definition.This enables testing switches from full CWL to Snakemake, for example, while preserving the possibility to execute the generated workflow.