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MicrobiomeWorkflow

workflow step classes and workflow graphs in XML for MicrobiomeDB

Dependencies

  • yarn / npm / ant
  • environment variables for GUS_HOME and PROJECT_HOME
  • Internal Dependencies
    • ApiCommonWorkflow, ReFlow, EbrcModelCommon

Installation instructions.

  • bld MicrobiomeWorkflow

Operating instructions.

  • changes to workflow template files requires generateFromDatasets ExampleDatasets

Manifest

Main/bin
scripts to generate workflow files from dataset files for a provided component project.
Main/lib/perl
workflow step classes in Perl. These are reusable modules for any type of task.
Main/lib/xml
workflow graphs in XML. These graphs have steps that depend on each other and can also call subgraphs. Each step is a parameterized call to a step class.