dnaseq Experiment#83

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jbrestel wants to merge 21 commits into

Commits on Apr 5, 2026

Integrate dnaseq-nextflow into ReFlow via new dnaseqExperiment template

jbrestel
and
claude
committed

Commits on May 13, 2026

Merge branch 'master' into dnaseq-reflow
jbrestel
committed

Commits on May 15, 2026

Commits on May 20, 2026

Removing entry parameter from ngs sample workflow in runNextflowOnCluster
rdemko2332
committed

Commits on Jun 2, 2026

Commits on Jun 3, 2026

gate clusterOptions on lsf executor; add maxMemoryGigs param for bwaMem

jbrestel
and
claude
committed
dynamically size bwaMem memory from genome fasta using (Gb*3.3)+2 rule

jbrestel
and
claude
committed
pass genomeFastaFile to nextflowConfig step for dynamic memory sizing

jbrestel
and
claude
committed

Commits on Jun 4, 2026

debug $genomeFastaFile
sufenhu
committed

Commits on Jun 5, 2026

add step to copy DNASeq bigwig files to webservices directory

jbrestel
and
claude
committed