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template matching results and visualization links
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docs/03-tutorial/04-template-matching/index.md

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@@ -124,7 +124,7 @@ If you don't have an HPC or don't use SLURM, you can just run the regular [pytom
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> Some numbers: ~40 min per subvolume (tomogram is split in 4) so 2.5 to 3h per tomo with 7° angular sampling at bin4 on rtx4090 node (we could have ask for more resources of course).
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1.5h when you use the same parameters but a 10° (testing 15000 angles) angular sampling instead of 7° (testing 50000 angles). Random-phase correction will basically double the computation time, but we recommend using it, especially for more challenging targets. Any symmetry assumptions or a spherical mask will further speed up computation time!
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You can check the `_scores.mrc` file in IMOD for example to already see if template matching was successful. If you open the `tomogram.mrc` and `_scores.mrc` at the same time you should see bright dots at the center of each of your particles of interest. Later in this section, we'll show you how to **[visualize your particles first with IMOD]**(/03-tutorial/04-template-matching/#checkimod), and then more appealingly using **[ChimeraX & ArtiaX]**(/03-tutorial/04-template-matching/#viz).
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You can check the `_scores.mrc` file in IMOD for example to already see if template matching was successful. If you open the `tomogram.mrc` and `_scores.mrc` at the same time you should see bright dots at the center of each of your particles of interest. Later in this section, we'll show you how to [visualize your particles first with IMOD](/03-tutorial/04-template-matching/#checkimod), and then more appealingly using [ChimeraX & ArtiaX](/03-tutorial/04-template-matching/#viz).
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### Running template matching on RELION5 tomograms {#rln5tm}
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