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GrannyCLI::_setAnalysisParams issue #24

@spficklin

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@spficklin

This function calls analysis.resetInParams() and then adds a new parameter which was already there. The purpose instead should just be to set the value of an existing paramter. This should be fixed. The side effect is that if a user doesn't provide all of the parameters on the command-line then default values won't work properly.

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