From 013aaabff7320137bd8f1dfd267287c5deedee63 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 18 May 2026 21:06:41 +0000 Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/mwouts/jupytext: v1.19.1 → v1.19.3](https://github.com/mwouts/jupytext/compare/v1.19.1...v1.19.3) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index d1976347..8b93deb5 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/mwouts/jupytext - rev: v1.19.1 + rev: v1.19.3 hooks: - id: jupytext args: [--sync] From 8d7036d60059c23f3292690fe04668231c5511ef Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 18 May 2026 21:06:52 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- examples/Advanced_Sampling_Introduction.md | 2 +- examples/Installing_a_PySAGES_Environment.md | 2 +- examples/hoomd-blue/ann/Butane_ANN.md | 2 +- examples/hoomd-blue/cff/Butane_CFF.md | 2 +- examples/hoomd-blue/funn/Butane_FUNN.md | 2 +- examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md | 2 +- examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md | 2 +- .../hoomd-blue/umbrella_integration/Umbrella_Integration.md | 2 +- examples/openmm/harmonic_bias/Harmonic_Bias.md | 2 +- examples/openmm/metad/Metadynamics-ADP.md | 2 +- examples/openmm/metad/nacl/Metadynamics_NaCl.md | 2 +- examples/openmm/spectral_abf/ADP_SpectralABF.md | 2 +- 12 files changed, 12 insertions(+), 12 deletions(-) diff --git a/examples/Advanced_Sampling_Introduction.md b/examples/Advanced_Sampling_Introduction.md index f0d9b1cc..1a228e6b 100644 --- a/examples/Advanced_Sampling_Introduction.md +++ b/examples/Advanced_Sampling_Introduction.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/Installing_a_PySAGES_Environment.md b/examples/Installing_a_PySAGES_Environment.md index 6dc5e5b5..d54bd8b7 100644 --- a/examples/Installing_a_PySAGES_Environment.md +++ b/examples/Installing_a_PySAGES_Environment.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/ann/Butane_ANN.md b/examples/hoomd-blue/ann/Butane_ANN.md index 0bfe9e37..acca311f 100644 --- a/examples/hoomd-blue/ann/Butane_ANN.md +++ b/examples/hoomd-blue/ann/Butane_ANN.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/cff/Butane_CFF.md b/examples/hoomd-blue/cff/Butane_CFF.md index 79d43dba..225ab860 100644 --- a/examples/hoomd-blue/cff/Butane_CFF.md +++ b/examples/hoomd-blue/cff/Butane_CFF.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/funn/Butane_FUNN.md b/examples/hoomd-blue/funn/Butane_FUNN.md index 5f29b614..3b8d68ac 100644 --- a/examples/hoomd-blue/funn/Butane_FUNN.md +++ b/examples/hoomd-blue/funn/Butane_FUNN.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md index 44fb14b6..a4ab6ea7 100644 --- a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md +++ b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md b/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md index 4b6676bf..846598e6 100644 --- a/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md +++ b/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md @@ -6,7 +6,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 language: python diff --git a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md index b7f9782c..c90bd840 100644 --- a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md +++ b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/openmm/harmonic_bias/Harmonic_Bias.md b/examples/openmm/harmonic_bias/Harmonic_Bias.md index 30aa0947..1bfcb8f5 100644 --- a/examples/openmm/harmonic_bias/Harmonic_Bias.md +++ b/examples/openmm/harmonic_bias/Harmonic_Bias.md @@ -6,7 +6,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 language: python diff --git a/examples/openmm/metad/Metadynamics-ADP.md b/examples/openmm/metad/Metadynamics-ADP.md index 36ea644c..c0de1176 100644 --- a/examples/openmm/metad/Metadynamics-ADP.md +++ b/examples/openmm/metad/Metadynamics-ADP.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3 diff --git a/examples/openmm/metad/nacl/Metadynamics_NaCl.md b/examples/openmm/metad/nacl/Metadynamics_NaCl.md index 5d16abc7..b361e7e9 100644 --- a/examples/openmm/metad/nacl/Metadynamics_NaCl.md +++ b/examples/openmm/metad/nacl/Metadynamics_NaCl.md @@ -6,7 +6,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/examples/openmm/spectral_abf/ADP_SpectralABF.md b/examples/openmm/spectral_abf/ADP_SpectralABF.md index 559eebc3..8ac8b2e0 100644 --- a/examples/openmm/spectral_abf/ADP_SpectralABF.md +++ b/examples/openmm/spectral_abf/ADP_SpectralABF.md @@ -7,7 +7,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.19.1 + jupytext_version: 1.19.3 kernelspec: display_name: Python 3 name: python3