From f8336882aef1f6d68d33b9da7ca2423a021a6a56 Mon Sep 17 00:00:00 2001 From: Jan Petr Date: Fri, 12 Jun 2026 09:53:11 +0200 Subject: [PATCH 1/2] Add pages with new TFs --- docs/tf/tf2-2.md | 5 ++++- docs/tf/tf2-5.md | 19 +++++++++++++++++++ docs/tf/tf2-6.md | 20 ++++++++++++++++++++ docs/tf/tf2-7.md | 20 ++++++++++++++++++++ docs/tf/tf3-3.md | 22 ++++++++++++++++++++++ docs/tf/tf3-4.md | 20 ++++++++++++++++++++ docs/tf/tf4-4.md | 20 ++++++++++++++++++++ docs/tf/tf4-5.md | 20 ++++++++++++++++++++ docs/tf/tf4-6.md | 20 ++++++++++++++++++++ docs/tf/tf5-3.md | 20 ++++++++++++++++++++ docs/tf/tf5-4.md | 20 ++++++++++++++++++++ docs/tf/tf6-1.md | 5 +++++ docs/tf/tf6-2.md | 4 ++++ docs/tf/tf6-3.md | 20 ++++++++++++++++++++ 14 files changed, 234 insertions(+), 1 deletion(-) create mode 100644 docs/tf/tf2-5.md create mode 100644 docs/tf/tf2-6.md create mode 100644 docs/tf/tf2-7.md create mode 100644 docs/tf/tf3-3.md create mode 100644 docs/tf/tf3-4.md create mode 100644 docs/tf/tf4-4.md create mode 100644 docs/tf/tf4-5.md create mode 100644 docs/tf/tf4-6.md create mode 100644 docs/tf/tf5-3.md create mode 100644 docs/tf/tf5-4.md create mode 100644 docs/tf/tf6-3.md diff --git a/docs/tf/tf2-2.md b/docs/tf/tf2-2.md index bbaf1c9..af2d7e3 100644 --- a/docs/tf/tf2-2.md +++ b/docs/tf/tf2-2.md @@ -6,7 +6,10 @@ The code repository details are listed on the [Code Repositories page](../pyCode ## Leads -- [María Mora](mailto:magumoal@gmail.com) +- [María Mora](mailto:mmoraalvar@childrensnational.org) +- [Zhiliang Wei](mailto:zwei11@jhu.edu) + +## Past Leads - [Azeez Adebimpe](mailto:azeez.adebimpe@bayer.com) ## Ongoing projects diff --git a/docs/tf/tf2-5.md b/docs/tf/tf2-5.md new file mode 100644 index 0000000..168b24e --- /dev/null +++ b/docs/tf/tf2-5.md @@ -0,0 +1,19 @@ +# TF2.5 — Open-source ASL +Demonstrate feasibility of acquiring ASL data across multiple vendors using 100% open-source tools + +## Leads + +- [Ben Dickie](mailto:ben.dickie@manchester.ac.uk) +- [Martijn Nagtegaal](mailto:M.A.Nagtegaal@lumc.nl) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf2-6.md b/docs/tf/tf2-6.md new file mode 100644 index 0000000..1f9ae94 --- /dev/null +++ b/docs/tf/tf2-6.md @@ -0,0 +1,20 @@ +# TF2.6 — OSIPI python package + +To develop OSIPY, a community-led open source python library for quantitative perfusion MRI that replaces fragmented, in-house analysis tools with a standardized, reproducible, and accessible solution. + +## Leads + +- [Luis Torres](mailto:luigibytes@gmail.com) +- [Petra van Houdt](mailto:p.v.houdt@nki.nl) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf2-7.md b/docs/tf/tf2-7.md new file mode 100644 index 0000000..838d3dd --- /dev/null +++ b/docs/tf/tf2-7.md @@ -0,0 +1,20 @@ +# TF2.7 — IVIM preprocessing + +The taskforce aims to develop a code repository that implements all necessary preprocessing steps for IVIM data. + +## Leads + +- [Susi Rauh](mailto:s.s.rauh@lumc.nl) +- [Siria Pasini](mailto:Siria.Pasini@marionegri.it) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf3-3.md b/docs/tf/tf3-3.md new file mode 100644 index 0000000..2f0244c --- /dev/null +++ b/docs/tf/tf3-3.md @@ -0,0 +1,22 @@ +# TF3.3 — IVIM big data collection + +To establish the extent to which site-, and vendor-specific differences impact quantitative IVIM measurement outcomes +To create a controlled-access repository of in vivo multi-site IVIM test-retest data + + +## Leads + +- [Julia Stabinska](mailto:jstabin3@jhu.edu) +- [Helge Zoellner](mailto:hzoelln2@jhmi.edu) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf3-4.md b/docs/tf/tf3-4.md new file mode 100644 index 0000000..c86ada3 --- /dev/null +++ b/docs/tf/tf3-4.md @@ -0,0 +1,20 @@ +# TF3.4 — Data Register + +The taskforce aims to set-up a data registry of perfusion MRI to enable easier collaboration across the community + +## Leads + +- [Mathijs Dijsselhof](mailto:) +- [Co-lead?](mailto:) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf4-4.md b/docs/tf/tf4-4.md new file mode 100644 index 0000000..d4bc66f --- /dev/null +++ b/docs/tf/tf4-4.md @@ -0,0 +1,20 @@ +# TF4.4 — BBB MRI lexicon + +To define standardized terminology, mathematical models, and best practices for BBB-MRI and to evaluate differences between BBB MRI approaches via simulations or experimental studies + +## Leads + +- [Beatriz Padrela](mailto:b.estevespadrela@amsterdamumc.nl) +- [Ben Dickie](mailto:ben.dickie@manchester.ac.uk) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf4-5.md b/docs/tf/tf4-5.md new file mode 100644 index 0000000..95c4b4a --- /dev/null +++ b/docs/tf/tf4-5.md @@ -0,0 +1,20 @@ +# TF4.5 — IVIM lexicon + +To harmonize terminology for intravoxel incoherent motion (IVIM) though the development of a community-endorsed lexicon + +## Leads + +- [Oscar Jalnefjord](mailto:oscar.jalnefjord@gu.se) +- [Swati Rane](mailto:slevendovszky@kumc.edu) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf4-6.md b/docs/tf/tf4-6.md new file mode 100644 index 0000000..5499ed5 --- /dev/null +++ b/docs/tf/tf4-6.md @@ -0,0 +1,20 @@ +# TF4.6 — Method section generator + +To develop publicly available online tool that would serve beginner-intermediate users of MRI perfusion techniques to correctly report the acquisition settings + +## Leads + +- [David Thomas](mailto:d.thomas@ucl.ac.uk) +- [Jan Petr](mailto:j.petr@hzdr.de) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf5-3.md b/docs/tf/tf5-3.md new file mode 100644 index 0000000..f81e2b2 --- /dev/null +++ b/docs/tf/tf5-3.md @@ -0,0 +1,20 @@ +# TF5.3 — AURA artifact repository + +To create an artifact inventory for perfusion imaging, including ASL, DCE and DSC + +## Leads + +- [Patricia Clemen](mailto:patricia.clement@ugent.be) +- [Sudipto Dolui](mailto:sudiptod@pennmedicine.upenn.edu) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf5-4.md b/docs/tf/tf5-4.md new file mode 100644 index 0000000..0c648e2 --- /dev/null +++ b/docs/tf/tf5-4.md @@ -0,0 +1,20 @@ +# TF5.4 — Clinical case reports + +To compile a collection of clinical ASL case reports featuring commonly encountered pathologies and characteristic image findings + +## Leads + +- [Thomas Lindner](mailto:t.lindner@uke.de) +- [Yuriko Suzuki](mailto:yuriko.l.suzuki@gmail.com) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources diff --git a/docs/tf/tf6-1.md b/docs/tf/tf6-1.md index 73d3a5e..b5c4a26 100644 --- a/docs/tf/tf6-1.md +++ b/docs/tf/tf6-1.md @@ -16,6 +16,11 @@ The ISMRM ASL MRI Challenge is the outcome of the first roadmap set by OSIPI TF6 ## Leads +- [Lena Vaclavu](mailto:l.vaclavu@lumc.nl) +- [Aisling Fothergill](mailto:aisling.fothergill@manchester.ac.uk) + +## Past Leads + - [Andre Paschoal](mailto:andremp@unicamp.br) - [Icaro Oliveira](mailto:icaro.oliveira2@uhn.ca) diff --git a/docs/tf/tf6-2.md b/docs/tf/tf6-2.md index a856eb6..2e8b5d6 100644 --- a/docs/tf/tf6-2.md +++ b/docs/tf/tf6-2.md @@ -16,6 +16,10 @@ The first challenge by this task force focused on benchmarking DCE software. As ## Leads +- [Olivia Jones](mailto:olivia.jones-4@manchester.ac.uk) + +## Past Leads + - [Soudabeh Kargar](mailto:soudabeh.kargar@gmail.com) - [Harrison Kim](mailto:hyunkikim@uabmc.edu) diff --git a/docs/tf/tf6-3.md b/docs/tf/tf6-3.md new file mode 100644 index 0000000..195f69d --- /dev/null +++ b/docs/tf/tf6-3.md @@ -0,0 +1,20 @@ +# TF6.3 — IVIM algorithm comparison + +To study, quantify and explain the differences between IVIM fitting algorithms using the OSIPI IVIM code collection + +## Leads + +- [Oliver Gurney Champion](mailto:o.j.gurney-champion@amsterdamumc.nl) +- [Ben Neijndorff](mailto:b.neijndorff@nki.nl) + +## Ongoing projects + +Projects + +## Publications + +- Publications + +## Resources + +Resources From 297ae3cff634e80ab8d5205cb6927c513580d338 Mon Sep 17 00:00:00 2001 From: Jan Petr Date: Fri, 12 Jun 2026 10:02:09 +0200 Subject: [PATCH 2/2] Link new TFs --- docs/taskforces.md | 55 ++++++++++++++++++++++++++++++++++++++++++++++ mkdocs.yml | 11 ++++++++++ 2 files changed, 66 insertions(+) diff --git a/docs/taskforces.md b/docs/taskforces.md index dec616d..b7bb97f 100644 --- a/docs/taskforces.md +++ b/docs/taskforces.md @@ -36,6 +36,21 @@ Develops community-driven open-source code libraries for perfusion imaging analy Gathered and tested code for intravoxel incoherent motion (IVIM) analysis, with model fitting code in Python and Matlab. [Task Force 2.4 details](tf/tf2-4.md) + +!!! abstract "TF2.5 — Open-source ASL" + Demonstrate feasibility of acquiring ASL data across multiple vendors using 100% open-source tools + + [Task Force 2.5 details](tf/tf2-5.md) + +!!! abstract "TF2.6 — OSIPI python package" + To develop OSIPY, a community-led open source python library for quantitative perfusion MRI that replaces fragmented, in-house analysis tools with a standardized, reproducible, and accessible solution + + [Task Force 2.6 details](tf/tf2-6.md) + +!!! abstract "TF2.7 — IVIM preprocessing" + The taskforce aims to develop a code repository that implements all necessary preprocessing steps for IVIM data. + + [Task Force 2.7 details](tf/tf2-7.md) ## Aim 3 — Data Inventory @@ -50,6 +65,16 @@ Inventories with open-access (pre-)clinical or phantom data and digital referenc Inventory of freely available clinical and preclinical perfusion MRI data. This task force is currently inactive due to insufficient members. [Task Force 3.2 details](tf/tf3-2.md) + +!!! abstract "TF3.3— IVIM big data collection" + To establish the extent to which site-, and vendor-specific differences impact quantitative IVIM measurement outcomes.To create a controlled-access repository of in vivo multi-site IVIM test-retest data + + [Task Force 3.3 details](tf/tf3-3.md) + +!!! abstract "TF3.4 — Data Register" + The taskforce aims to set-up a data registry of perfusion MRI to enable easier collaboration across the community + + [Task Force 3.4 details](tf/tf3-4.md) ## Aim 4 — Lexicons @@ -66,7 +91,22 @@ Develop terminology and reporting guidelines for image acquisition and perfusion [Lexicons overview](lexicons.md)
[📘 CAPLEX documentation](https://osipi.github.io/OSIPI_CAPLEX/) + +!!! abstract "TF4.4 — BBB MRI lexicon" + To define standardized terminology, mathematical models, and best practices for BBB-MRI and to evaluate differences between BBB MRI approaches via simulations or experimental studies + + [Task Force 4.4 details](tf/tf4-4.md) +!!! abstract "TF4.5 — IVIM lexicon" + To harmonize terminology for intravoxel incoherent motion (IVIM) though the development of a community-endorsed lexicon + + [Task Force 4.5 details](tf/tf4-5.md) + +!!! abstract "TF4.6 — Method section generator" + To develop publicly available online tool that would serve beginner-intermediate users of MRI perfusion techniques to correctly report the acquisition settings + + [Task Force 4.6 details](tf/tf4-6.md) + ## Aim 5 — Exchange and Education platform Dissemination of resources through website and educational activities. @@ -81,6 +121,16 @@ Dissemination of resources through website and educational activities. [Task Force 5.2 details](tf/tf5-2.md) +!!! abstract "TF5.3 — AURA artifact repository" + To create an artifact inventory for perfusion imaging, including ASL, DCE and DSC + + [Task Force 5.3 details](tf/tf5-3.md) + +!!! abstract "TF5.4 — Clinical case reports" + To compile a collection of clinical ASL case reports featuring commonly encountered pathologies and characteristic image findings + + [Task Force 5.4 details](tf/tf5-4.md) + ## Aim 6 — Challenges Develop challenges that compare the performance of perfusion image analysis software. @@ -94,3 +144,8 @@ Develop challenges that compare the performance of perfusion image analysis soft Develops challenges comparing DSC/DCE perfusion image analysis software. [Task Force 6.2 details](tf/tf6-2.md) + +!!! abstract "TF6.3 — IVIM algorithm comparison" + To study, quantify and explain the differences between IVIM fitting algorithms using the OSIPI IVIM code collection + + [Task Force 6.3 details](tf/tf6-3.md) diff --git a/mkdocs.yml b/mkdocs.yml index 99f8524..8654721 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -157,18 +157,29 @@ nav: - "(TF2.2) ASL Code": tf/tf2-2.md - "(TF2.3) DSC/DCE Code": tf/tf2-3.md - "(TF2.4) IVIM Code": tf/tf2-4.md + - "(TF2.5) Open-source ASL": tf/tf2-5.md + - "(TF2.6) OSIPI python package": tf/tf2-6.md + - "(TF2.7) IVIM preprocessing": tf/tf2-7.md - "Aim 3 – Data": - "(TF3.1) DROs & Phantoms": tf/tf3-1.md - "(TF3.2) Clinical & Preclinical Data": tf/tf3-2.md + - "(TF3.3) IVIM big data collection": tf/tf3-3.md + - "(TF3.4) Data Register": tf/tf3-4.md - "Aim 4 – Lexicons": - "(TF4.1) ASL Lexicon": tf/tf4-1.md - "(TF4.2) CAPLEX": tf/tf4-2.md + - "(TF4.4) BBB MRI lexicon": tf/tf4-4.md + - "(TF4.5) IVIM lexicon": tf/tf4-5.md + - "(TF4.6) Method section generator": tf/tf4-6.md - "Aim 5 – Exchange & Education": - "(TF5.1) Website & Technical Support": tf/tf5-1.md - "(TF5.2) Education": tf/tf5-2.md + - "(TF5.3) AURA artifact repository": tf/tf5-3.md + - "(TF5.4) Clinical case reports": tf/tf5-4.md - "Aim 6 – Challenges": - "(TF6.1) ASL Challenge": tf/tf6-1.md - "(TF6.2) DSC/DCE Challenge": tf/tf6-2.md + - "(TF6.3) IVIM algorithm comparison": tf/tf6-3.md - "Roadmap 2026-2028": https://docs.google.com/document/d/1w2JlVK3hP5dgXMcrK8da5z94ivsK8Or__NU9qUR6WRk - Resources: