enomic error, working test files

[jamesdalg]

issue 1:
R/Classes.R has the following line with the following typo:

223	genomicFeature <- as(genomicFeature, "data.frame")
224	if (zero.based) {
225	enomicFeature$start <- genomicFeature$start - 1
issue 2:
Can you provide a working example of a small dataset that I can run start to finish (files I can run rather than R objects, so I can format my data just like yours)? I'm having a very difficult time getting this to run.
the countReads method has a very difficult time running, particularly with the countReads method in Windows:
tca.count.reads<-TCseq::countReads(tca,dir=paste0(groupdir,"dalgleishjl/bwaBam/"))
Error during wrapup: BiocParallel errors
element index: 1, 2, 3, 4, 5, 6, ...

[jamesdalg]

Additionally, I tried this on linux:

tca.count.reads<-TCseq::countReads(tca,dir=paste0(groupdir,"dalgleishjl/bwaBam/"),method='featureCounts')
Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
'data' must be of a vector type, was 'NULL'