I have scRNA-seq data resulting from sequencing on CD45+ cells. However, my spatial data was produced from all cells. As a result, many spots are mapped to worry scRNA-seq celltypes.
Now my idea is to manually add a "CD45- cells" in spatial data while deconvolution. Is this possible?
I have scRNA-seq data resulting from sequencing on CD45+ cells. However, my spatial data was produced from all cells. As a result, many spots are mapped to worry scRNA-seq celltypes.
Now my idea is to manually add a "CD45- cells" in spatial data while deconvolution. Is this possible?