forked from sperfu/findGSEP
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathDESCRIPTION
More file actions
24 lines (24 loc) · 1.08 KB
/
Copy pathDESCRIPTION
File metadata and controls
24 lines (24 loc) · 1.08 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
Package: findGSEP
Type: Package
Title: Estimate Genome Size of Polyploid Species Using k-Mer Frequencies
Version: 1.2.0
Authors@R: c(
person("Laiyi", "Fu", role = c("aut", "cre"), email = "fulaiyi321@163.com"),
person("Hequan", "Sun", role = "aut"))
Maintainer: Laiyi Fu <fulaiyi321@163.com>
Description: Provides tools to estimate the genome size of polyploid species using k-mer frequencies. This package includes functions to process k-mer frequency data and perform genome size estimation by fitting k-mer frequencies with a normal distribution model. It supports handling of complex polyploid genomes and offers various options for customizing the estimation process. The basic method 'findGSE' is detailed in Sun, Hequan, et al. (2018) <doi:10.1093/bioinformatics/btx637>.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Depends: R(>= 4.2.0),RColorBrewer,ggplot2,grDevices
Imports:
pracma,
scales,
dplyr,
RoxygenNote: 7.3.1
URL: https://github.com/sperfu/findGSEP
BugReports: https://github.com/sperfu/findGSEP/issues
Suggests:
knitr,
rmarkdown,
VignetteBuilder: knitr