Issues with running example data sets

[sebricgithub]

Hi,
I am attempting to get GlyCompareCT up and running, however, I run into issues in analyzing the example data sets. Here is my most recent error:

(glycompareCT) C:\Users\seaba\GlyCompareCT\Examples>python ../glyCompareCT.py structure -a test1_abd.csv -v test1_var.csv -o test1/ -p glycoCT -b -m integer -c 2 Validating input files... Traceback (most recent call last): File "C:\Users\seaba\GlyCompareCT\glyCompareCT.py", line 685, in <module> main() File "C:\Users\seaba\GlyCompareCT\glyCompareCT.py", line 54, in main input_validation(args) File "C:\Users\seaba\GlyCompareCT\glyCompareCT.py", line 103, in input_validation assert os.path.isdir(os.sep.join(args.output_directory.split(os.sep)[:-1])), "Invalid output path, check the path: " + os.sep.join(args.output_directory.split(os.sep)[:-1]) AssertionError: Invalid output path, check the path:
Note a directory to test1 has been created but this error is still returned.
My current directory is

`
(glycompareCT) C:\Users\seaba\GlyCompareCT\Examples>dir
Volume in drive C is Windows
Volume Serial Number is A414-7917

Directory of C:\Users\seaba\GlyCompareCT\Examples

2024-05-03 17:28

.
2024-05-03 17:29 ..
2024-05-03 17:14 8 196 .DS_Store
2024-05-03 17:14 Jin2017
2024-05-03 17:28 test1
2024-05-03 17:14 28 test1_abd.csv
2024-05-03 17:14 2 084 test1_var.csv
2024-05-03 17:14 28 test2_abd.csv
2024-05-03 17:14 2 084 test2_var.csv
2024-05-03 17:14 42 test3_abd.csv
2024-05-03 17:14 2 084 test3_var.csv
2024-05-03 17:14 28 test4_abd.csv
2024-05-03 17:14 2 084 test4_var.csv
9 File(s) 16 658 bytes
4 Dir(s) 344 891 121 664 bytes free
`

Current conda version is 24.4.0 and current python version is 3.10.14.final.0
platform : win-64
Any help would be greatly appreciated, thanks.

[zyj1729]

Could you try "-o .\test1", leave everything else the same?