version.xml

<package name="BREATH" version="0.0.4">
    <depends on="BEAST.base" atleast="2.7.5"/>
    <depends on="BEAST.app" atleast="2.7.5"/>

    
    <service type="beast.base.core.BEASTInterface">
        <provider classname="breath.distribution.TransmissionTreeLikelihood"/>
        <provider classname="breath.test.TransmissionTreeLikelihood"/>
        <provider classname="breath.distribution.TLDetailLogger"/>
        <provider classname="breath.distribution.GammaHazardFunction"/>
        <provider classname="breath.distribution.Validator"/>
        
        <provider classname="breath.operator.BlockOperator"/>
        <provider classname="breath.operator.InfectionMover"/>
        <provider classname="breath.operator.InfectionMover2"/>
        <provider classname="breath.operator.InfectionMover3"/>
        <provider classname="breath.operator.OriginAndRootHeightMover"/>
        <provider classname="breath.operator.TreeWrapOperator"/>
        
		<provider classname="breath.logger.ColouredTreeLogger"/>
        <provider classname="breath.util.InfectionCount"/>
        <provider classname="breath.util.ColourLogger"/>
        <provider classname="breath.util.InfectorOfLogger"/>
        <provider classname="breath.util.OriginCalculator"/>

        <provider classname="breath.evolution.LinearGrowth"/>

	</service>    
	
    <service type="beastfx.app.inputeditor.InputEditor">
		<provider classname="breath.beauti.GammaHazardFunctionInputEditor"/>
	</service>    
	
	<packageapp description="Convert transmission tree log into trace log with who infected who" class="breath.util.TransmissionTree2InfectorOfLog" args=""/>
    <packageapp description="Convert transmission tree log into bar plot with transmission times" class="breath.util.TransmissionTreeInfectionTimes" args=""/>
	<packageapp description="Calculate coverage of who infected who" class="breath.util.InfectedByCoverageCalculator" args=""/>
	<packageapp description="Create coverage plot from Infected-By-Coverage-Calculator screen output" class="breath.util.CoveragePlot" args=""/>
    <packageapp description="Simulates transmission tree" class="breath.util.TransmissionTreeSimulator" args=""/>
    <packageapp description="Provide statistics of set of transmission trees" class="breath.util.TransmissionTreeStats" args=""/>
    <packageapp description="Create SVG files to visualise who infected who" class="breath.util.WIWVisualiser" args=""/>

    <packageapp description="Produce table for lineages through time plot of unsampled hosts with 95%HPD bounds" class="breath.util.UnsampledLTTCounter" args=""/>

	
</package>