writeExperimentParametersGUI.m

function writeExperimentParametersGUI(experiment_path, out_file_name)
    target_path = sprintf("%s/%s", experiment_path, out_file_name);
    if isfile(target_path)
        return
    end
    splitted_path = split(experiment_path, "/");
    dialog_title = sprintf("User defined details for: %s", splitted_path{end});
    defaults = {'1','1','1.28','','10','2'}; % put here DEFAULT values for the movie info
    dialog_dimensions = [ 1.5  100];
    prompt = {...
        'Sample type [1=fragment,  2=ring, 3=strip, 4=open ring]', ...
        'Environment [1=gel, 2=solution, 3=methyl cellulose]', ...
        'Calibration [in um/px]', ...
        'Start time in minutes (after excision)', ...
        'Time interval in minutes' , ...
        'Planned projection type [1=max projection, 2=layer separation]'...
    };

    sampleTypeOptions = {'fragment', 'ring', 'strip', 'open ring'};
    environmentOptions = {'gel', 'solution', 'methyl celluluse'};
    projectionTypeOptions = {'max','layer separation'};
    
    answer = inputdlg(prompt,dialog_title,dialog_dimensions,defaults);
    config.sampleType = sampleTypeOptions{str2double(answer{1})};
    config.environment = environmentOptions{str2double(answer{2})};
    config.calibration = str2double(answer{3}); % in um/pix
    config.startTime = str2double(answer{4}); % time movie started after exxcision in minutes
    config.timeInterval = str2double(answer{5}); % time interval in minutes; if ==0 time stamp file will be entered
    config.projectionType = projectionTypeOptions{str2double(answer{6})};

    yaml.dumpFile(target_path, config, "block");
end