Hello,
I recently read your PRISM paper and found it to be an excellent and elegant approach for high-plex RNA detection in a single round. While going through the analysis materials, I became particularly interested in several statistical procedures described in the paper.
I noticed that the file PRISM-Analysis/MouseEmbryo/Check_Cell_Interaction.ipynb appears to be invalid or corrupted. Could you kindly update or re-upload this file?
Additionally, when attempting to reproduce the 2D HCC harmony integration, it seems that the integrated adata indices are not updated according to the manual annotations. I would greatly appreciate it if you could provide a working notebook that reproduces the corresponding results presented in the paper.
Thank you very much for your time and for sharing such impactful work.
Best regards.
Hello,
I recently read your PRISM paper and found it to be an excellent and elegant approach for high-plex RNA detection in a single round. While going through the analysis materials, I became particularly interested in several statistical procedures described in the paper.
I noticed that the file
PRISM-Analysis/MouseEmbryo/Check_Cell_Interaction.ipynbappears to be invalid or corrupted. Could you kindly update or re-upload this file?Additionally, when attempting to reproduce the 2D HCC harmony integration, it seems that the integrated
adataindices are not updated according to the manual annotations. I would greatly appreciate it if you could provide a working notebook that reproduces the corresponding results presented in the paper.Thank you very much for your time and for sharing such impactful work.
Best regards.