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modules.json
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187 lines (187 loc) · 8.49 KB
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{
"name": "HoffLab/phageannotator",
"homePage": "https://github.com/HoffLab/phageannotator",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bacphlip": {
"branch": "master",
"git_sha": "9ca62539bfc7660e4943134d1c3cc63410ba01a9",
"installed_by": ["modules"]
},
"blast/blastn": {
"branch": "master",
"git_sha": "4262a04142431275e54e1f4b413628a2201ed6e6",
"installed_by": ["modules"]
},
"blast/makeblastdb": {
"branch": "master",
"git_sha": "a01c66c96e0bc610ad126e7adc4a94cd4acd1b48",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "0fe30831abbc2ed115e46e92330edf38f56edc3d",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "9437e6053dccf4aafa022bfd6e7e9de67e625af8",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "4fc983ad0b30e6e32696fa7d980c76c7bfe1c03e",
"installed_by": ["modules"]
},
"checkv/downloaddatabase": {
"branch": "master",
"git_sha": "56cf5a89c2646ad50195635cf18df4028a6928ce",
"installed_by": ["modules"]
},
"checkv/endtoend": {
"branch": "master",
"git_sha": "56cf5a89c2646ad50195635cf18df4028a6928ce",
"installed_by": ["modules"]
},
"checkv/updatedatabase": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"cobrameta": {
"branch": "master",
"git_sha": "647fb8e703ef352161eac8791ac0468e4727c4f7",
"installed_by": ["modules"]
},
"custom/sratoolsncbisettings": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["fastq_download_prefetch_fasterqdump_sratools", "modules"]
},
"fastp": {
"branch": "master",
"git_sha": "1ceaa8ba4d0fd886dbca0e545815d905b7407de7",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastp/fastp.diff"
},
"fastqc": {
"branch": "master",
"git_sha": "f4ae1d942bd50c5c0b9bd2de1393ce38315ba57c",
"installed_by": ["modules"]
},
"genomad/download": {
"branch": "master",
"git_sha": "9b68cbd01a704aaf2c34f6d6bc7c25e9b4670147",
"installed_by": ["modules"]
},
"genomad/endtoend": {
"branch": "master",
"git_sha": "9b68cbd01a704aaf2c34f6d6bc7c25e9b4670147",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"iphop/download": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"iphop/predict": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"megahit": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"installed_by": ["modules"]
},
"pharokka/installdatabases": {
"branch": "master",
"git_sha": "10e88ef2f1f3ff012a2c9562de95c264006ebf21",
"installed_by": ["modules"]
},
"pharokka/pharokka": {
"branch": "master",
"git_sha": "10e88ef2f1f3ff012a2c9562de95c264006ebf21",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"seqkit/grep": {
"branch": "master",
"git_sha": "2be41ca2cc780eca4293d1b0dd3850b0b7ac40a3",
"installed_by": ["modules"]
},
"spades": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"sratools/fasterqdump": {
"branch": "master",
"git_sha": "dd935314930f972117455672f89e5cb0794719e5",
"installed_by": ["fastq_download_prefetch_fasterqdump_sratools"]
},
"sratools/prefetch": {
"branch": "master",
"git_sha": "dd935314930f972117455672f89e5cb0794719e5",
"installed_by": ["fastq_download_prefetch_fasterqdump_sratools"]
},
"untar": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"fastq_download_prefetch_fasterqdump_sratools": {
"branch": "master",
"git_sha": "1fc29f92e439d5631fdf34b8ac4687297d70f5ec",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}