Effectively chunk2stack i.e. zarr --> tiff/nifti/dicom (reverse of https://github.com/HiPCTProject/stack-to-chunk)
Start with a Jupyter notebook (step 0) before implementing (step 1)
Step 2 keeping track of co-ordinates.
Would need some kind of metadata spec for keeping track of exported sub-volumes.
Bounding box in Napari to pull out data into tiffs (see https://hoa-tools.readthedocs.io/en/stable/tutorial/vois/ for co-ordinates across different resolutions as a part-solution for this purpose) - dependency on #10
Effectively chunk2stack i.e. zarr --> tiff/nifti/dicom (reverse of https://github.com/HiPCTProject/stack-to-chunk)
Start with a Jupyter notebook (step 0) before implementing (step 1)
Step 2 keeping track of co-ordinates.
Would need some kind of metadata spec for keeping track of exported sub-volumes.
Bounding box in Napari to pull out data into tiffs (see https://hoa-tools.readthedocs.io/en/stable/tutorial/vois/ for co-ordinates across different resolutions as a part-solution for this purpose) - dependency on #10