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\documentclass[a4paper]{report}
% Packages
\usepackage{enumitem}
\usepackage{graphicx}
\usepackage{array}
\usepackage{float}
\usepackage{url}
\usepackage[maxbibnames=5,style=numeric,backend=bibtex,sorting=nty,firstinits=true]{biblatex} \bibliography{ref}
\usepackage[noabbrev,capitalise]{cleveref}
\usepackage{tabularx}
\usepackage{tabu}
\usepackage{longtable}
\usepackage[british]{babel}
\usepackage[font=footnotesize]{caption}
\usepackage{csquotes}
\usepackage{color}
\usepackage{rotating}
\usepackage{amssymb}
\usepackage{textcomp}
% Settings
% Margins in lists
\setlist[itemize]{noitemsep}
\setlist[enumerate]{noitemsep}
% Margins in tables
\renewcommand{\arraystretch}{1.3}
% Block hbox warnings
\hfuzz=2pt
% Make phantomsection available
\providecommand\phantomsection{}
% Text replacement commands
\newcommand{\ie}{i.e.,}
\newcommand{\eg}{e.g.,}
\newcommand{\IVF}{IVF}
\newcommand{\PRN}{PRN}
\newcommand{\AMC}{AMC}
\newcommand{\project}{DARTS!}
\newcommand{\nsg}{NSG}
\newcommand{\projectdata}{D-dataset}
\newcommand{\ivfsystem}{D-gateway}
\newcommand{\ivfprototype}{D-prototype}
\newcommand{\escience}{e-Science}
% Commenting commands
\newcommand{\silvia}[1]{\textcolor{red}{\textbf{*Silvia: }\textit{#1}}}
\newcommand{\allard}[1]{\textcolor{magenta}{\textbf{*Allard: }\textit{#1}}}
\newcommand{\note}[1]{\textcolor{cyan}{\textit{#1}}}
\title{A Data Management System for the Dutch Assisted Reproductive Technology Study}
\author{
Allard J. van Altena\\
University of Amsterdam\\
Email: a.j.vanaltena@amc.uva.nl
}
\begin{document}
\input{partials/introduction/frontpage}
\input{partials/introduction/titlepage}
\tableofcontents
\input{partials/introduction/summary-english}
\input{partials/introduction/summary-dutch}
\chapter{Introduction}
\label{introduction}
\input{partials/introduction/introduction-domain}
\input{partials/introduction/introduction-big-data}
\input{partials/introduction/introduction-questions}
\chapter{Requirement Analysis}
\label{requirements}
\input{partials/requirements/intro}
\input{partials/requirements/security}
\input{partials/requirements/process-analysis}
\input{partials/requirements/initial-concept}
\input{partials/requirements/brainstorm}
\input{partials/requirements/final-concept}
\chapter{System Design \& Implementation}
\label{system-functionality}
\input{partials/design-implementation/intro}
\input{partials/design-implementation/functional-design}
\input{partials/design-implementation/reuse-review}
\input{partials/design-implementation/reuse-rosemary}
\input{partials/design-implementation/implementation}
\chapter{System Evaluation}
\label{evaluation}
\input{partials/evaluation/evaluation-transcripts}
\input{partials/evaluation/evaluation-summary}
\chapter{Discussion \& Conclusion}
\label{discussion}
\input{partials/discussion-conclusion/overview-implications}
\input{partials/discussion-conclusion/appraisal}
\input{partials/discussion-conclusion/conclusion}
\clearpage
\chapter{Bibliography}
\printbibliography[heading=none]
\appendix
\chapter{Abbreviations}
\label{abbreviations}
\input{partials/appendices/abbreviations}
\chapter{Brainstorm Schemas}
\label{brainstorm-before-after}
\input{partials/appendices/brainstorm-schemas-appendix}
\chapter{Security Review}
\label{security-review-appendix}
\input{partials/reviews/security-introduction}
\input{partials/reviews/security-interviews}
\input{partials/reviews/security-summary}
\chapter{Provenance Review}
\label{provenance-review-appendix}
\input{partials/reviews/provenance}
\chapter{Security Checklists}
\label{security-appendix}
\input{partials/appendices/security-checklists-appendix}
\chapter{Identified Functions}
\label{identified-functions}
\input{partials/appendices/identified-functions-appendix}
\chapter{Unedited Rosemary Data Model}
\label{unedited-datamodel}
\input{partials/appendices/unedited-datamodel}
\end{document}