ecoli_genome.bed is hard coded in

[vsmalladi]

The ecoli_genome.bed is hard coded in organied_by_TSS_type.pl.

I assume this is for annotation files and can either be GTF or BED file to see start sites.
Can we add an option to add our own bed/gtf file?

[Ettwiller]

Dear Vsmalladi,

Yes it is indeed hardcoded. Let me get back to this script and clean it up to allow for user imput of their own bewd/gtf file. Thank you for point this out,

Cordially
Laurence

[vsmalladi]

Thanks for the update Laurence.