From 6ed92af992d5939720037e7dcebaef11c6055ed8 Mon Sep 17 00:00:00 2001 From: Akshay Dedaniya <54439564+Dedaniya08@users.noreply.github.com> Date: Thu, 9 Apr 2020 08:22:42 +0530 Subject: [PATCH] Update README.md --- README.md | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index fbe17b2..605e109 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,17 @@ # VCF_TO_PLINK + The __vcf_to_plink.py__ script will convert Unphased vcf file to plink format and it is written in _Python3_. The converted file can be used in plink with --file option. + + ## Usage of the script -The program can be run using the following command\ -```python vcf_to_plink.py -i -o ```\ -To get the above help provide -h in the terminal\ -```python vcf_to_plink.py -h```\ + +The program can be run using the following command + +```python vcf_to_plink.py -i -o ``` + +To get the above help provide -h in the terminal + +```python vcf_to_plink.py -h``` + Two file names are required for the script to run successfully. Input file succeding '-i' is the vcf file name you want to convert. '-o' is the plink formatted output file name. Please don't add any extension after the file name such as '.vcf' or '.ped/.map'. These are all taken care by the script. +