Skip to content

move organismal qualities to PATO or OBA #137

@cmungall

Description

@cmungall

The following are under organismal quality. I recommend moving most of these to PATO or OBA, or both.

In some cases, the label is more generic than the definition, e.g. nocturnal. I recommend having the general quality in PATO (e.g. nocturnal - a characteristic of an activity/process that happens during the night) and having the organismal quality in OBA.

Additional notes:

  • area-to-mass-ratio is misplaced, this should just go directly under ratio in PATO
  • there is a separate ticket for diet
  • some of these say "evolutionary quality" as the genus, but the actual parent is "organismal quality". These should match
[Term]
id: ECOCORE:00000024
name: area to mass ratio
def: "Quotient (or ratio) of surface area of an organism divided by the mass of the same organism" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000027
name: primary diet
def: "Type of food comprising the majority of the diet of an organism" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000039
name: cursorial
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for running" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000040
name: fossorial
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for digging and living underground" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000041
name: arboreal
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for living in trees" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000078
name: crepuscular
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000079
name: nocturnal
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for being active during the hours of darkness" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000080
name: diurnal
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for being active during the hours of daylight" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000081
name: migratory
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for participating in long-distance movement of conspecifics, usually on a seasonal basis" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000142
name: anecic
def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to burrow more than 20 cm deep into the soil and make permanent, vertical burrows." []
is_a: PATO:0001995 ! organismal quality

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions