From 36883fa0960b66f4845dff1406ce6f81952fefe0 Mon Sep 17 00:00:00 2001 From: Daniel Chang Date: Tue, 2 Jan 2024 12:59:48 -0500 Subject: [PATCH] update deps --- Manifest.toml | 850 +++++++++++++++++++++++++++++++++++--------------- 1 file changed, 595 insertions(+), 255 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index d03b7b5..7153681 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,25 +1,33 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.0" +julia_version = "1.9.3" manifest_format = "2.0" project_hash = "ed3cb99e136042d98b0f2f39f8d9a96bce363f68" [[deps.ACSets]] -deps = ["CompTime", "JSON", "MLStyle", "OrderedCollections", "Pkg", "PrettyTables", "Reexport", "StaticArrays", "StructEquality", "Tables"] -git-tree-sha1 = "935a09f5a40d199ac9c7fb55357e2164b1ef8671" +deps = ["AlgebraicInterfaces", "Base64", "CompTime", "DataStructures", "JSON3", "MLStyle", "OrderedCollections", "Permutations", "Pkg", "PrettyTables", "Random", "Reexport", "SHA", "StaticArrays", "StructEquality", "Tables"] +git-tree-sha1 = "34377682dd9ebb3e17e4dbc4a7e6c5e9f068a665" uuid = "227ef7b5-1206-438b-ac65-934d6da304b8" -version = "0.2.3" +version = "0.2.11" + + [deps.ACSets.extensions] + NautyACSetsExt = "nauty_jll" + XLSXACSetsExt = "XLSX" + + [deps.ACSets.weakdeps] + XLSX = "fdbf4ff8-1666-58a4-91e7-1b58723a45e0" + nauty_jll = "55c6dc9b-343a-50ca-8ff2-b71adb3733d5" [[deps.ADTypes]] -git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.5" +version = "0.2.6" [[deps.AbstractAlgebra]] deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Preferences", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = "1bd8a536c949eb3de9b58042d57790ded6b70fa6" +git-tree-sha1 = "d7832de8cf7af26abac741f10372080ac6cb73df" uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d" -version = "0.30.9" +version = "0.34.7" [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -28,19 +36,24 @@ version = "0.4.4" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AlgebraicInterfaces]] +git-tree-sha1 = "a81b76ea8d1801494562dd057315e4b7b25b8de1" +uuid = "23cfdc9f-0504-424a-be1f-4892b28e2f0c" +version = "0.1.1" + [[deps.AlgebraicPetri]] deps = ["Catlab", "GeneralizedGenerated", "LabelledArrays"] -git-tree-sha1 = "d798c838e065927a09edf431791d34fd5a709023" +git-tree-sha1 = "25a196f3b0de6182f47769c79fc31260c0597977" uuid = "4f99eebe-17bf-4e98-b6a1-2c4f205a959b" -version = "0.9.0" +version = "0.9.2" [deps.AlgebraicPetri.extensions] AlgebraicPetriCatalystExt = "Catalyst" @@ -70,9 +83,9 @@ version = "0.2.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -90,6 +103,16 @@ version = "7.4.11" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +[[deps.ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "b08a4043e1c14096ef8efe4dd97e07de5cacf240" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "1.4.5" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" + [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -97,14 +120,14 @@ uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.Bijections]] -git-tree-sha1 = "fe4f8c5ee7f76f2198d5c2a06d3961c249cce7bd" +git-tree-sha1 = "c9b163bd832e023571e86d0b90d9de92a9879088" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.4" +version = "0.1.6" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] @@ -114,9 +137,9 @@ version = "0.1.5" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "89e0654ed8c7aebad6d5ad235d6242c2d737a928" +git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.3" +version = "0.2.4" [[deps.CSTParser]] deps = ["Tokenize"] @@ -131,10 +154,10 @@ uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" version = "0.5.1" [[deps.Catlab]] -deps = ["ACSets", "Colors", "CompTime", "Compose", "DataStructures", "GeneralizedGenerated", "JSON", "LightXML", "LinearAlgebra", "Logging", "MLStyle", "PrettyTables", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StructEquality", "Tables"] -git-tree-sha1 = "c610008c7dc9907a0112b3d48f75a6de806e1aeb" +deps = ["ACSets", "AlgebraicInterfaces", "Colors", "CompTime", "Compose", "DataStructures", "GATlab", "GeneralizedGenerated", "JSON3", "LightXML", "LinearAlgebra", "Logging", "MLStyle", "PrettyTables", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StructEquality", "Tables"] +git-tree-sha1 = "3286deb17c5799b1956f815b11487fd1aed97d3e" uuid = "134e5e36-593f-5add-ad60-77f754baafbe" -version = "0.15.1" +version = "0.16.4" [deps.Catlab.extensions] CatlabConvexExt = "Convex" @@ -155,10 +178,14 @@ version = "0.15.1" TikzPictures = "37f6aa50-8035-52d0-81c2-5a1d08754b2d" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "2118cb2765f8197b08e5958cdd17c165427425ee" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.16.0" +version = "1.19.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -168,15 +195,15 @@ version = "0.1.12" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "d730914ef30a06732bdd9f763f6cc32e92ffbff1" +git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.1" +version = "1.3.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.1" +version = "0.7.3" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -220,9 +247,9 @@ version = "0.1.2" [[deps.Compat]] deps = ["UUIDs"] -git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" +git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.7.0" +version = "4.10.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -231,7 +258,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.2+0" +version = "1.0.5+0" [[deps.Compose]] deps = ["Base64", "Colors", "DataStructures", "Dates", "IterTools", "JSON", "LinearAlgebra", "Measures", "Printf", "Random", "Requires", "Statistics", "UUIDs"] @@ -244,17 +271,22 @@ git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.3" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "96d823b94ba8d187a6d8f0826e731195a74b90e9" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.0" +version = "2.3.0" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "738fec4d684a9a6ee9598a8bfee305b26831f28c" +git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.2" +version = "1.5.4" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -279,9 +311,9 @@ version = "1.15.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" +git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.14" +version = "0.18.15" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -293,13 +325,15 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "62c41421bd0facc43dfe4e9776135fe21fd1e1b9" +deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "53159da9fef2dd92815499e18f93b699ed54f397" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.126.0" +version = "6.145.5" [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -307,10 +341,11 @@ version = "6.126.0" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -318,13 +353,16 @@ version = "6.126.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "63b6be7b396ad395825f3cc48c56b53bfaf7e69d" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "cf334da651a6e42c50e1477d6ab978f1b8be3057" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.26.1" +version = "2.36.1" + + [deps.DiffEqCallbacks.weakdeps] + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -339,28 +377,35 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.8" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "9242eec9b7e2e14f9952e8ea1c7e31a50501d587" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.98" +version = "0.25.104" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -391,59 +436,88 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPolynomials]] -deps = ["DataStructures", "Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "8b84876e31fa39479050e2d3395c4b3b210db8b0" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] +git-tree-sha1 = "fea68c84ba262b121754539e6ea0546146515d4f" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.4.6" +version = "0.5.3" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[deps.EnzymeCore]] +deps = ["Adapt"] +git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b" +uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.6.4" + [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" + +[[deps.ExponentialUtilities]] +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "602e4585bcbd5a25bc06f514724593d13ff9e862" +uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" +version = "1.25.0" [[deps.ExprTools]] -git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.9" +version = "0.1.10" [[deps.EzXML]] deps = ["Printf", "XML2_jll"] -git-tree-sha1 = "0fa3b52a04a4e210aeb1626def9c90df3ae65268" +git-tree-sha1 = "380053d61bb9064d6aa4a9777413b40429c79901" uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615" -version = "1.1.0" +version = "1.2.0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "d1248fceea0b26493fd33e8e9e8c553270da03bd" +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.5" +version = "0.2.8" + +[[deps.FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" +version = "0.3.2" + +[[deps.FastLapackInterface]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "b12f05108e405dadcc2aff0008db7f831374e051" +uuid = "29a986be-02c6-4525-aec4-84b980013641" +version = "2.0.0" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.20" +version = "0.9.21" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "2250347838b28a108d1967663cba57bfb3c02a58" +deps = ["LinearAlgebra", "Random"] +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.3.0" +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" +version = "2.22.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -469,9 +543,9 @@ version = "0.4.2" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.35" +version = "0.10.36" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -488,10 +562,22 @@ git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.5" + [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +[[deps.GATlab]] +deps = ["AlgebraicInterfaces", "Colors", "Crayons", "DataStructures", "JSON", "MLStyle", "Random", "Reexport", "StructEquality", "UUIDs"] +git-tree-sha1 = "2ee8cc36b69ab432d42eec913fcdff60d1228dc0" +uuid = "f0ffcf3b-d13a-433e-917c-cc44ccf5ead2" +version = "0.1.0" + [[deps.GMP_jll]] deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" @@ -509,11 +595,17 @@ git-tree-sha1 = "60f1fa1696129205873c41763e7d0920ac7d6f1f" uuid = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" version = "0.3.3" +[[deps.GenericSchur]] +deps = ["LinearAlgebra", "Printf"] +git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" +uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" +version = "0.5.3" + [[deps.Genie]] -deps = ["ArgParse", "Dates", "Distributed", "DotEnv", "EzXML", "FilePathsBase", "HTTP", "HttpCommon", "Inflector", "JSON3", "JuliaFormatter", "Logging", "LoggingExtras", "MIMEs", "Markdown", "Millboard", "Nettle", "OrderedCollections", "Pkg", "REPL", "Random", "Reexport", "Revise", "SHA", "Serialization", "Sockets", "UUIDs", "Unicode", "YAML"] -git-tree-sha1 = "e051925627ddecbd95c12a919e1f3801126c8bed" +deps = ["ArgParse", "Base64", "Dates", "Distributed", "DotEnv", "EzXML", "FilePathsBase", "HTTP", "HttpCommon", "Inflector", "JSON3", "JuliaFormatter", "Logging", "LoggingExtras", "MIMEs", "Markdown", "Millboard", "Nettle", "OrderedCollections", "Pkg", "REPL", "Random", "Reexport", "Revise", "SHA", "Serialization", "Sockets", "UUIDs", "Unicode", "XML2_jll", "YAML"] +git-tree-sha1 = "b5b61b98fda013ca2f7e3acd6a931c7ac7cf82e9" uuid = "c43c736e-a2d1-11e8-161f-af95117fbd1e" -version = "5.18.1" +version = "5.23.6" [[deps.Glob]] git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" @@ -522,27 +614,33 @@ version = "1.3.1" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.Groebner]] -deps = ["AbstractAlgebra", "Combinatorics", "Logging", "MultivariatePolynomials", "Primes", "Random", "SnoopPrecompile"] -git-tree-sha1 = "c8b55b624a83f60bcd6574cc999ad148d0a47dd6" +deps = ["AbstractAlgebra", "Combinatorics", "ExprTools", "Logging", "MultivariatePolynomials", "PrecompileTools", "PrettyTables", "Primes", "Printf", "Random", "SIMD", "TimerOutputs"] +git-tree-sha1 = "6b505ef15e55bdc5bb3ddbcfebdff1c9e67081e8" uuid = "0b43b601-686d-58a3-8a1c-6623616c7cd4" -version = "0.3.6" +version = "0.5.1" [[deps.GroupsCore]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9e1a5e9f3b81ad6a5c613d181664a0efc6fe6dd7" +git-tree-sha1 = "6df9cd6ee79fc59feab33f63a1b3c9e95e2461d5" uuid = "d5909c97-4eac-4ecc-a3dc-fdd0858a4120" -version = "0.4.0" +version = "0.4.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "2ee0eb8746650f498ed9a109383aa399b2a0c515" +git-tree-sha1 = "abbbb9ec3afd783a7cbd82ef01dcd088ea051398" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.10" +version = "1.10.1" + +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" [[deps.HttpCommon]] deps = ["Dates", "Nullables", "Test", "URIParser"] @@ -552,9 +650,9 @@ version = "0.5.0" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "ce7ea9cc5db29563b1fe20196b6d23ab3b111384" +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.18" +version = "0.3.23" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -562,9 +660,9 @@ uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" [[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" +version = "0.1.4" [[deps.Inflector]] deps = ["Unicode"] @@ -577,15 +675,25 @@ git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" version = "0.1.2" +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.0.2+0" + [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] -git-tree-sha1 = "16c0cc91853084cb5f58a78bd209513900206ce6" +deps = ["Dates", "Random"] +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.4" +version = "0.7.8" +weakdeps = ["Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -593,9 +701,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -603,10 +711,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" +version = "1.5.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -616,27 +724,33 @@ version = "0.21.4" [[deps.JSON3]] deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] -git-tree-sha1 = "5b62d93f2582b09e469b3099d839c2d2ebf5066d" +git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.13.1" +version = "1.14.0" + + [deps.JSON3.extensions] + JSON3ArrowExt = ["ArrowTypes"] + + [deps.JSON3.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" [[deps.JSONSchema]] -deps = ["Downloads", "HTTP", "JSON", "URIs"] -git-tree-sha1 = "58cb291b01508293f7a9dc88325bc00d797cf04d" +deps = ["Downloads", "JSON", "JSON3", "URIs"] +git-tree-sha1 = "5f0bd0cd69df978fa64ccdcb5c152fbc705455a1" uuid = "7d188eb4-7ad8-530c-ae41-71a32a6d4692" -version = "1.1.0" +version = "1.3.0" [[deps.JuliaFormatter]] deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "60567b51bd9e1e19ae2fd8a54dcd6bc5994727f0" +git-tree-sha1 = "8f5295e46f594ad2d8652f1098488a77460080cd" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.34" +version = "1.0.45" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "6a125e6a4cb391e0b9adbd1afa9e771c2179f8ef" +git-tree-sha1 = "e49bce680c109bc86e3e75ebcb15040d6ad9e1d3" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.23" +version = "0.9.27" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -645,21 +759,37 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "9eae998d01d31e4fc7d79dda8a6b7695d872eee8" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] +git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.6.4" +version = "9.10.1" +weakdeps = ["FastBroadcast"] + + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" + +[[deps.KLU]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "884c2968c2e8e7e6bf5956af88cb46aa745c854b" +uuid = "ef3ab10e-7fda-4108-b977-705223b18434" +version = "0.4.1" + +[[deps.Krylov]] +deps = ["LinearAlgebra", "Printf", "SparseArrays"] +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" +uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +version = "0.9.5" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.LabelledArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "cd04158424635efd05ff38d5f55843397b7416a9" +git-tree-sha1 = "f12f2225c999886b69273f84713d1b9cb66faace" uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.14.0" +version = "1.15.0" [[deps.LambertW]] git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" @@ -682,9 +812,9 @@ version = "0.16.1" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -692,6 +822,20 @@ git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" version = "0.15.1" +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "9cfca23ab83b0dfac93cb1a1ef3331ab9fe596a5" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.8.3" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -715,16 +859,16 @@ version = "1.10.2+0" uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+2" +version = "1.17.0+0" [[deps.LightXML]] deps = ["Libdl", "XML2_jll"] -git-tree-sha1 = "e129d9391168c677cd4800f5c0abb1ed8cb3794f" +git-tree-sha1 = "3a994404d3f6709610701c7dabfc03fed87a81f8" uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179" -version = "0.9.0" +version = "0.9.1" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] @@ -736,11 +880,46 @@ version = "7.2.0" deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +[[deps.LinearSolve]] +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "97dc499678d50d989f1a74170840808641ce9880" +uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" +version = "2.22.0" + + [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + + [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" +git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.24" +version = "0.3.26" [deps.LogExpFunctions.extensions] LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -757,21 +936,38 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.0" +version = "1.0.3" + +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.166" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 = "60168780555f3e663c536500aa790b6368adc02a" +git-tree-sha1 = "38756922d32476c8f41f73560b910fc805a5a103" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" -version = "2.3.0" +version = "2.4.3" [[deps.MIMEs]] git-tree-sha1 = "65f28ad4b594aebe22157d6fac869786a255b7eb" uuid = "6c6e2e6c-3030-632d-7369-2d6c69616d65" version = "0.1.4" +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.0.0+0" + [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" @@ -779,9 +975,9 @@ version = "0.4.17" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2" +git-tree-sha1 = "b211c553c199c111d998ecdaf7623d1b89b69f93" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.10" +version = "0.5.12" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -792,11 +988,23 @@ version = "0.1.8" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MatrixFactorizations]] +deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "78f6e33434939b0ac9ba1df81e6d005ee85a7396" +uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" +version = "2.1.0" + +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "a85c6a98c9e5a2a7046bc1bb89f28a3241e1de4d" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.1" + [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -823,15 +1031,17 @@ version = "1.1.0" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "IfElse", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "MacroTools", "NaNMath", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "cad27947bc85b1a3136f395f22a7dd5c382b7209" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "IfElse", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "MacroTools", "NaNMath", "OrdinaryDiffEq", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "11f35f9619c625c18454a94a9013e7d047501fbf" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "8.62.0" +version = "8.75.0" [deps.ModelingToolkit.extensions] + MTKBifurcationKitExt = "BifurcationKit" MTKDeepDiffsExt = "DeepDiffs" [deps.ModelingToolkit.weakdeps] + BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" [[deps.MozillaCACerts_jll]] @@ -845,15 +1055,15 @@ version = "0.2.4" [[deps.MultivariatePolynomials]] deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "eaa98afe2033ffc0629f9d0d83961d66a021dfcc" +git-tree-sha1 = "6ffb234d6d7c866a75c1879d2099049d3a35a83a" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.4.7" +version = "0.5.3" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "964cb1a7069723727025ae295408747a0b36a854" +git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.3.0" +version = "1.4.0" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -895,11 +1105,50 @@ version = "3.7.2+0" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.NonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "72b036b728461272ae1b1c3f7096cb4c319d8793" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "3.4.0" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLsolveExt = "NLsolve" + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSymbolicsExt = "Symbolics" + NonlinearSolveZygoteExt = "Zygote" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Nullables]] git-tree-sha1 = "8f87854cc8f3685a60689d8edecaa29d2251979b" uuid = "4d1e1d77-625e-5b40-9113-a560ec7a8ecd" version = "1.0.0" +[[deps.OffsetArrays]] +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" @@ -918,9 +1167,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cae3153c7f6cf3f069a853883fd1919a6e5bab5b" +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.9+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -929,15 +1178,27 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.OrderedCollections]] -git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.0" +version = "1.6.3" + +[[deps.OrdinaryDiffEq]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "96ae028da53cdfe24712ab015a6f854cfd7609c0" +uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +version = "6.66.0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.17" +version = "0.11.31" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -947,14 +1208,20 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.1" +version = "2.8.1" + +[[deps.Permutations]] +deps = ["Combinatorics", "LinearAlgebra", "Random"] +git-tree-sha1 = "c7745750b8a829bc6039b7f1f0981bcda526a946" +uuid = "2ae35dd2-176d-5d53-8349-f30d82d94d4f" +version = "0.4.19" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.0" +version = "1.9.2" [[deps.PoissonRandom]] deps = ["Random"] @@ -964,9 +1231,9 @@ version = "0.4.4" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "0fe4e7c4d8ff4c70bfa507f0dd96fa161b115777" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.3" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -976,9 +1243,9 @@ version = "0.2.1" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] -git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" +git-tree-sha1 = "01ac95fca7daabe77a9cb705862bd87016af9ddb" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.12" +version = "0.4.13" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -988,15 +1255,15 @@ version = "0.4.12" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" +git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.1.2" +version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1" +git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.0" +version = "1.4.1" [[deps.PrettyPrint]] git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" @@ -1004,16 +1271,16 @@ uuid = 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"9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.2" +version = "2.9.1" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1035,9 +1302,9 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.RandomExtensions]] deps = ["Random", "SparseArrays"] -git-tree-sha1 = "062986376ce6d394b23d5d90f01d81426113a3c9" +git-tree-sha1 = "b8a399e95663485820000f26b6a43c794e166a49" uuid = "fb686558-2515-59ef-acaa-46db3789a887" -version = "0.4.3" +version = "0.4.4" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1052,21 +1319,31 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "02ef02926f30d53b94be443bfaea010c47f6b556" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "27ee1c03e732c488ecce1a25f0d7da9b5d936574" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.5" +version = "3.3.3" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.RecursiveFactorization]] +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" +uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" +version = "0.2.21" + [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -1080,9 +1357,9 @@ version = "1.3.0" [[deps.Revise]] deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "1e597b93700fa4045d7189afa7c004e0584ea548" +git-tree-sha1 = "033b3dcf811234b6d0bad28ea5395981c387fad2" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.3" +version = "3.5.11" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] @@ -1098,30 +1375,59 @@ version = "0.4.0+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "0b9b18d6236e9ab2b092defaacdffd929d572642" +git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.9" +version = "0.5.12" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SIMD]] +deps = ["PrecompileTools"] +git-tree-sha1 = "d8911cc125da009051fb35322415641d02d9e37f" +uuid = "fdea26ae-647d-5447-a871-4b548cad5224" +version = "3.4.6" + [[deps.SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "a22a12db91f6a921e28a7ae39a9546eed93fd92e" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "09324a0ae70c52a45b91b236c62065f78b099c37" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.93.0" +version = "2.15.2" + + 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"0.3.3" +version = "0.3.7" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1142,16 +1448,16 @@ uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" [[deps.SimpleNonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "Requires", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "56aa73a93cdca493af5155a0338a864ed314222b" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "8d672bd91dc432fb286b6d4bcf1a5dc417e932a3" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.16" +version = "1.2.0" [deps.SimpleNonlinearSolve.extensions] - SimpleBatchedNonlinearSolveExt = "NNlib" + SimpleNonlinearSolvePolyesterForwardDiffExt = "PolyesterForwardDiff" [deps.SimpleNonlinearSolve.weakdeps] - NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1159,30 +1465,51 @@ git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.4" -[[deps.SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +[[deps.SparseDiffTools]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "c281e11db4eacb36a292a054bac83c5a0aca2a26" +uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" +version = "2.15.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Sparspak]] +deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" +uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" +version = "0.3.9" + [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" +git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.0" +version = "2.3.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1190,38 +1517,36 @@ weakdeps = ["ChainRulesCore"] [[deps.Static]] deps = ["IfElse"] -git-tree-sha1 = "dbde6766fc677423598138a5951269432b0fcc90" +git-tree-sha1 = "f295e0a1da4ca425659c57441bcb59abb035a4bc" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.7" +version = "0.8.8" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.0" +version = "1.5.0" +weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [deps.StaticArrayInterface.weakdeps] - OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0da7e6b70d1bb40b1ace3b576da9ea2992f76318" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "42d5373c10272d14ef49cc68ffc22df3b93c549a" uuid = 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"SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.0" +version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -1256,20 +1581,21 @@ version = "1.3.0" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "26316a9a43d32ecd0c5b342cb36dc86305c73e53" +git-tree-sha1 = "d6415f66f3d89c615929af907fdc6a3e17af0d8c" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.16" +version = "0.5.2" [[deps.StringEncodings]] deps = ["Libiconv_jll"] -git-tree-sha1 = "33c0da881af3248dafefb939a21694b97cfece76" +git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" uuid = "69024149-9ee7-55f6-a4c4-859efe599b68" -version = "0.3.6" +version = "0.3.7" [[deps.StringManipulation]] -git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.0" +version = "0.3.4" [[deps.StructEquality]] deps = ["Compat"] @@ -1305,22 +1631,27 @@ uuid = "1b6eb727-ad4b-44eb-9669-b9596a6e760f" version = "0.2.1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "be414bfd80c2c91197823890c66ef4b74f5bf5fe" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.1" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs", "Unityper"] -git-tree-sha1 = "5cb1f963f82e7b81305102dd69472fcd3e0e1483" +deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TimerOutputs", "Unityper"] +git-tree-sha1 = "849b1dfb1680a9e9f2c6023f79a49b694fb6d0da" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "1.0.5" +version = "1.5.0" [[deps.Symbolics]] -deps = ["ArrayInterface", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "Markdown", "NaNMath", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TreeViews"] -git-tree-sha1 = "c4e5688a9a5a2f4088cd1a779b0742be31cbe9aa" +deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils"] +git-tree-sha1 = "8d28ebc206dec9e250e21b9502a2662265897650" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.5.0" +version = "5.14.1" + + [deps.Symbolics.extensions] + SymbolicsSymPyExt = "SymPy" + + [deps.Symbolics.weakdeps] + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" [[deps.TOML]] deps = ["Dates"] @@ -1334,10 +1665,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.1" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1366,26 +1697,29 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.23" [[deps.Tokenize]] -git-tree-sha1 = "90538bf898832b6ebd900fa40f223e695970e3a5" +git-tree-sha1 = "0454d9a9bad2400c7ccad19ca832a2ef5a8bc3a1" uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" -version = "0.5.25" +version = "0.5.26" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] -[[deps.TreeViews]] -deps = ["Test"] -git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6" -uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" -version = "0.3.0" + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.TriangularSolve]] +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" +uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" +version = "0.1.20" [[deps.Tricks]] -git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.7" +version = "0.1.8" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -1400,9 +1734,9 @@ uuid = "30578b45-9adc-5946-b283-645ec420af67" version = "0.4.1" [[deps.URIs]] -git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.2" +version = "1.5.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -1418,9 +1752,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "c4d2a349259c8eba66a00a540d550f122a3ab228" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.15.0" +version = "1.19.0" [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" @@ -1432,15 +1766,27 @@ version = "1.15.0" [[deps.Unityper]] deps = ["ConstructionBase"] -git-tree-sha1 = "d5f4ec8c22db63bd3ccb239f640e895cfde145aa" +git-tree-sha1 = "25008b734a03736c41e2a7dc314ecb95bd6bbdb0" uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" -version = "0.1.2" +version = "0.1.6" + +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.65" + +[[deps.VertexSafeGraphs]] +deps = ["Graphs"] +git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" +uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" +version = "0.2.0" [[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.3+0" +version = "2.10.4+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] @@ -1453,16 +1799,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.13+0" -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.7.0+0" +version = "5.8.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"]