diff --git a/.github/workflows/workflow.yml b/.github/workflows/workflow.yml
index a1159460fc..fa9e2635d3 100644
--- a/.github/workflows/workflow.yml
+++ b/.github/workflows/workflow.yml
@@ -268,8 +268,16 @@ jobs:
         ASPIREDIR=${{ env.WORK_DIR }} python -c \
         "import aspire; print(aspire.config['cache']['cache_dir']); import aspire.downloader; aspire.downloader.emdb_2660()"
     - name: Run
+      env:
+        PYTEST_CI_FILTERWARNINGS: |-
+          error
+          ignore::UserWarning:tests.*
       run: |
-        ASPIREDIR=${{ env.WORK_DIR }} PYTHONWARNINGS=error python -m pytest --durations=50 --cov=aspire --cov-report=xml
+        ASPIREDIR=${{ env.WORK_DIR }} python -m pytest \
+          -o "filterwarnings=${PYTEST_CI_FILTERWARNINGS}" \
+          --durations=50 \
+          --cov=aspire \
+          --cov-report=xml
     - name: Upload Coverage to CodeCov
       uses: codecov/codecov-action@v4
       with: