CLASH/pyproject.toml at main · ChaissonLab/CLASH · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "Clash_Valmik_Ranparia"
version = "0.1.0"
description = "CLASH (Chromatin Loop Across-sample Score Harmonizer) scores chromatin loops from Hi-C contact data to allow for quantitative cross-sample loop strength comparisons at the same locus."
readme = "README.md"
requires-python = ">=3.9"

authors = [
    {name = "Valmik Ranparia", email="valmikranparia@gmail.com"}
]

license = { text = "MIT" }

keywords = ["genomics", "Hi-C", "chromatin loop", "bioinformatics"]

classifiers = [
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Topic :: Scientific/Engineering :: Bio-Informatics"
]


dependencies = [
    "numpy>=1.23",
    "pandas>=1.5",
    "scipy>=1.9",
    "xgboost>=1.7"
]

[project.urls]
#Homepage = "https://github.com/yourusername/clash"


# 🔑 THIS creates the CLI command
[project.scripts]
clash = "clash.clash:main"

[tool.setuptools]
package-dir = {"" = "src"}


[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools.package-data]
clash = ["*.json"]