Tutorial not running

[Sepulcrum89]

Dear developers,
I found your paper and with read it with great interest. Furthermore, I have discovered this repository and would like to integrate it into my academic research at the Ruhr University in Bochum, Germany.

For this I have wanted to try to implement your example in doc/Tutorial.txt
Prior to that, I have cloned the repository and installed all the requirements as mentioned in the readme. I am using a Ubuntu 18.04.2 LTS machine.

When running your example, I am able to import your library and read a neuron SWC file, found in this repository.
I am having trouble with the last command. The following error is being returned to my terminal:

'Neuron' object has no attribute 'neurite'

I would like to request assistance with this. I have been browsing your files and did not find suitable documentation for this specific error. Is there a FAQ or wiki entry?

I am looking forward to hearing from you!
Best regards

[lidakanari]

Hi,

Thank you for your interest on our work! We are glad to provide feedback.

You should replace "neurite" with "neurites". This should resolve the issue. I have updated the tutorial accordingly.

You can also use the example here, for more details on how to start working on this:
https://github.com/BlueBrain/TMD/blob/master/examples/extract_ph.py

Please let me know if you have any issues,
Lida