2022-10-05 10:08:59.419265: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2022-10-05 10:09:01.960968: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
WARNING:tensorflow:Please fix your imports. Module tensorflow.python.training.tracking.base has been moved to tensorflow.python.trackable.base. The old module will be deleted in version 2.11.
Traceback (most recent call last):
File "/prediction.py", line 36, in <module>
main()
File "/prediction.py", line 33, in main
prediction(infile,outfile)
File "/prediction.py", line 10, in prediction
X,geneinfo = get_pred_data(infile)
File /utils.py", line 91, in get_pred_data
(seqmatrix, gene, rank) = get_seq_matrix(infile,seqmatrix,rank)
File "/utils.py", line 48, in get_seq_matrix
seqmatrix[rank] = seqcode
ValueError: could not broadcast input array from shape (4,675) into shape (4,201)
Dear all,
I am trying to use this interesting tool to predict CTCF binding to my lncRNA using:
python /prediction.py -f /Users/tali/Desktop/lncRNA_seqes.fa -o prediction.outputhowever, the tool throws out this error message:
what might be went wrong?
Im using MacOS 12.2
thanks much
Tamer