Include useful informations in a *Snakemake HTML report* (https://snakemake.readthedocs.io/en/stable/snakefiles/reporting.html), for example: - reads quality profiles - a table with the number of sequences kept/lost at each rule - the runtime of each rule - workflow diagram - diversity/composition plots (when issue #1 will be solved) An example here: https://pnnl.github.io/hundo/
Include useful informations in a Snakemake HTML report (https://snakemake.readthedocs.io/en/stable/snakefiles/reporting.html), for example:
An example here: https://pnnl.github.io/hundo/