From 9f02cc0b77d304f15eeb61fdca9832f76ed21a11 Mon Sep 17 00:00:00 2001
From: Florian Jochheim <florian.jochheim@gmx.de>
Date: Mon, 10 Aug 2026 09:52:41 +0200
Subject: [PATCH] setup.py: bump pyhmmer floor, 0.7.1 has no wheel and fails to
 build on python 3.13

0.7.1 fails to build from source on python@3.13 (removed CPython C-API
symbols: _PyLong_AsByteArray signature changed, _PyUnicode_FastCopyCharacters
removed). 0.11.0 is the lowest release with a cp313 wheel - verified with a
full round-trip functional test: writing a real HMM file via
aa_logits_to_hmm(), reading it back with pyhmmer.plan7.HMMFile, and running
a real hmmsearch(), no trace of the pyhmmer 0.8.0-era HMM-writing bug this
exact pin was originally guarding against.
---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index fb60abc..e11195d 100644
--- a/setup.py
+++ b/setup.py
@@ -40,7 +40,7 @@
         "mrcfile",
         "pandas",
         "fair-esm==1.0.3",
-        "pyhmmer==0.7.1",
+        "pyhmmer>=0.11.0",
         "loguru",
         "numpy<2.0",
     ],